Supplementary scripts for PARANOiD

Supplementary scripts for PARANOiD

Determine valid RNA subtypes

Script added to determine valid RNA subtypes for the RNA subtype analysis.

Script name: featuretypes-from-gtfgff.awk

Usage:

featuretypes-from-gtfgff.awk /path/to/anntotation_file.gff

Pull images

Pulls images via singularity. Images are used to build the containers used by processes.

Should be used to pull all images before starting PARANOiD.

Usage:

pull_images.sh /path/to/PARANOiD/dockerfiles /path/to/image_directory